PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00110g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 72aa    MW: 8625.82 Da    PI: 9.3653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00110g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08845148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W +eEde+l+  v+ lG +          ++R++k+c++rw++yl
  Peaxi162Scf00110g00004.1  8 RGQWLEEEDERLAMIVASLGER----------LRRSGKSCRLRWLNYL 45
                              899*****************99..........67999**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-10248IPR009057Homeodomain-like
PROSITE profilePS5129413.419349IPR017930Myb domain
SMARTSM007170.0018747IPR001005SANT/Myb domain
PfamPF002493.3E-7845IPR001005SANT/Myb domain
SuperFamilySSF466895.26E-14972IPR009057Homeodomain-like
CDDcd001670.001111145No hitNo description
Gene3DG3DSA:1.10.10.601.3E-64972IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MQEQGQRRGQ WLEEEDERLA MIVASLGERL RRSGKSCRLR WLNYLRPNLN HGHITEDEER  60
LIIQLQKQLG NK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543396.19e-34PREDICTED: transcription factor MYB48-like
SwissprotP102907e-20MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLK4D3H61e-33K4D3H6_SOLLC; Uncharacterized protein
STRINGSolyc10g083900.1.13e-33(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-23myb domain protein 27